Stem-loop sequence gga-mir-206

Accession

MI0001207 (change log)

Description

Gallus gallus miR-206 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

20 open access papers mention gga-mir-206
(184 sentences)

Stem-loop

   ------     g                cc     -   au 
5'       gagau acaugcuucuuuauau  ccaua ugg  u
         ||||| ||||||||||||||||  ||||| |||   
3'       cuuug ugugugaaggaaugua  gguau guc  a
   gaggga     g                -a     c   gg 

Deep sequencing

7782 reads, 80 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 108045182-108045257 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-206

• gga-mir-206: chr3: 108045182-108045257 [-]
• gga-mir-133b: chr3: 108040385-108040468 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075BF21_9031
• miRBase Tracker:MI0001207

Mature sequence gga-miR-206

• Accession: MIMAT0001139
• Sequence: 45 - uggaauguaaggaagugugugg - 66
• Deep sequencing: 7782 reads, 5 experiments
• Evidence: by similarity; MI0000490
• Database links:
  • RNAcentral:URS000034B6F5_9031
• Predicted targets:
  • TargetScanVert:gga-miR-206
  • miRDB:gga-miR-206

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).