Stem-loop sequence gga-mir-30a

Accession

MI0001204 (change log)

Description

Gallus gallus miR-30a stem-loop

Gene family

MIPF0000005; mir-30

Literature search

27 open access papers mention gga-mir-30a
(66 sentences)

Stem-loop

      a            uc           g gaagc 
5' gcg cuguaaacaucc  gacuggaagcu u     a
   ||| ||||||||||||  ||||||||||| |      
3' cgu gacguuuguagg  cugacuuucgg g     g
      c            --           g uagac 

Deep sequencing

6411658 reads, 7.95e+04 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr3: 82629084-82629155 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000029026 ; gga-mir-30a-201; exon 1

Database links

• EntrezGene:
• RNAcentral:URS0000759A68_9031
• miRBase Tracker:MI0001204

Mature sequence gga-miR-30a-5p

• Accession: MIMAT0001135
• Sequence: 6 - uguaaacauccucgacuggaag - 27
• Deep sequencing: 6068357 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS000043D1A9_9031
• Predicted targets:
  • TargetScanVert:gga-miR-30a-5p
  • miRDB:gga-miR-30a-5p

Mature sequence gga-miR-30a-3p

• Accession: MIMAT0001136
• Sequence: 48 - cuuucagucggauguuugcagc - 69
• Deep sequencing: 343297 reads, 5 experiments
• Evidence: by similarity; MI0000088
• Database links:
  • RNAcentral:URS0000065D58_9031
• Predicted targets:
  • TargetScanVert:gga-miR-30a-3p
  • miRDB:gga-miR-30a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).