miRBase entry: gga-mir-30b

Stem-loop gga-mir-30b


Accession
MI0001199
Description
Gallus gallus gga-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
22 open access papers mention gga-mir-30b
(93 sentences)

Sequence

20255 reads, 267 reads per million, 5 experiments
cuaacuuuuaguuccUGUAAACAUCCUACACUCAGCUauaacaagugguagggCUGGGGGGUGGAUGUUUACUUCaacugacuugga
((((...((((((...((((((((((.((.(((((((....(....)....)))))))..))))))))))))...)))))).)))).

Structure
-    cuu      ccU          U  -A       auaa a 
 cuaa   uuaguu   GUAAACAUCC AC  CUCAGCU    c a
 ||||   ||||||   |||||||||| ||  |||||||    |  
 gguu   agucaa   CAUUUGUAGG UG  GGGUCgg    g g
a    --c      CUU          -  GG       gaug u 


Annotation confidence High
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Genome context
chr2: 142757715-142757801 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-30b-5p

Accession MIMAT0001130
Description Gallus gallus gga-miR-30b-5p mature miRNA
Sequence 16 - UGUAAACAUCCUACACUCAGCU - 37
Evidence experimental
cloned [1-3], Northern [1], Illumina [4]
Database links
Predicted targets

Mature gga-miR-30b-3p

Accession MIMAT0026512
Description Gallus gallus gga-miR-30b-3p mature miRNA
Sequence 54 - CUGGGGGGUGGAUGUUUACUUC - 75
Evidence experimental
Illumina [4]

References

  1. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004

  4. PubMed ID: 16750530
    Identification of microRNAs from different tissues of chicken embryo and adult chicken
    "Xu H, Wang X, Du Z, Li N"
    "FEBS Lett (2006) 580:3610-3616

  5. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45