Stem-loop gga-mir-124a

Accession

MI0001197

Description

Gallus gallus gga-mir-124a precursor miRNA

Gene family

MIPF0000021; mir-124

Literature search

16 open access papers mention gga-mir-124a
(58 sentences)

Sequence

129762 reads, 1577 reads per million, 5 experiments

aggcucugccucuccguGUUCACAGCGGACCUUGAUuuaaugucauacaaUUAAGGCACGCGGUGAAUGCCAagagcggauccuccaggcggcauu
(((.(((((.(((..((((((((.(((..((((((((...........))))))))..))).))))))))..)))))))).)))............

Structure

------------   c     c   cc        A   GA        uaau 
            agg ucugc ucu  guGUUCAC GCG  CCUUGAUu    g
            ||| ||||| |||  |||||||| |||  ||||||||    u
            ucc aggcg aga  CGUAAGUG CGC  GGAAUUaa    c
uuacggcggacc   u     -   AC        G   AC        caua 

Annotation confidence High

Genome context

chr2: 114701964-114702059 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-124a

Mature gga-miR-124a-3p

• Accession: MIMAT0001128
• Description: Gallus gallus gga-miR-124a-3p mature miRNA
• Sequence: 51 - UUAAGGCACGCGGUGAAUGCCA - 72
• Evidence: experimental ; Illumina [2]

Mature gga-miR-124a-5p

• Accession: MIMAT0026511
• Description: Gallus gallus gga-miR-124a-5p mature miRNA
• Sequence: 18 - GUUCACAGCGGACCUUGAU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45