Stem-loop gga-mir-133a-1

Accession

MI0001195

Description

Gallus gallus gga-mir-133a-1 precursor miRNA

Gene family

MIPF0000029; mir-133

Literature search

26 open access papers mention gga-mir-133a-1
(121 sentences)

Sequence

15462 reads, 219 reads per million, 5 experiments

caaugcuuugcuaaAGCUGGUAAAAUGGAACCAAAUCaccucuucaauggauUUGGUCCCCUUCAACCAGCUGUagcuaugcauuga
((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))).

Structure

-      uuu    a       AA  U  A        accuc 
 caaugc   gcua AGCUGGU  AA GG ACCAAAUC     u
 ||||||   |||| |||||||  || || ||||||||      
 guuacg   cgaU UCGACCA  UU CC UGGUUuag     u
a      uau    G       AC  C  C        guaac 

Annotation confidence Not enough data

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr2: 102812734-102812820 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-133a-1

Mature gga-miR-133a-3p

• Accession: MIMAT0001126
• Description: Gallus gallus gga-miR-133a-3p mature miRNA
• Sequence: 53 - UUGGUCCCCUUCAACCAGCUGU - 74
• Evidence: experimental ; Illumina [2]

Mature gga-miR-133a-5p

• Accession: MIMAT0026509
• Description: Gallus gallus gga-miR-133a-5p mature miRNA
• Sequence: 15 - AGCUGGUAAAAUGGAACCAAAUC - 37
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45