Stem-loop sequence gga-mir-196-2

Accession

MI0001190 (change log)

Description

Gallus gallus miR-196-2 stem-loop

Gene family

MIPF0000031; mir-196

Literature search

6 open access papers mention gga-mir-196-2
(16 sentences)

Stem-loop

   ---------     cucu      u          a      u    cucc 
5'          aacug    gugguu agguaguuuc uguugu gggg    a
            |||||    |||||| |||||||||| |||||| ||||    c
3'          uugac    cauuaa uccgucaaag acgaca cucu    c
   cuacuauag     --uu      u          c      u    cuuu 

Deep sequencing

203956 reads, 2.46e+03 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 32707474-32707567 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000018004 ; HOXA2-202; intron 1

  ENSGALT00000018006 ; HOXA4-201; intron 2

Clustered miRNAs

< 10kb from gga-mir-196-2

• gga-mir-196-2: chr2: 32707474-32707567 [-]
• gga-mir-1732-1: chr2: 32706292-32706392 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075D9D4_9031
• miRBase Tracker:MI0001190

Mature sequence gga-miR-196-5p

• Accession: MIMAT0001121
• Sequence: 16 - uagguaguuucauguuguugg - 36
• Deep sequencing: 1021521 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS00000D9842_9031
• Predicted targets:
  • TargetScanVert:gga-miR-196-5p
  • miRDB:gga-miR-196-5p

Mature sequence gga-miR-196-2-3p

• Accession: MIMAT0026504
• Sequence: 53 - cuacagcacgaaacugccuuaa - 74
• Deep sequencing: 2 reads, 1 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-196-2-3p
  • miRDB:gga-miR-196-2-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).