Stem-loop sequence gga-mir-148a

Accession

MI0001189 (change log)

Description

Gallus gallus miR-148a stem-loop

Gene family

MIPF0000056; mir-148

Literature search

19 open access papers mention gga-mir-148a
(39 sentences)

Stem-loop

     ag            --a    ca    -   gu 
5' ga  caaaguucugug   cacu  gacu cug  u
   ||  ||||||||||||   ||||  |||| |||  a
3' cu  guuucaagacau   guga  cuga gau  c
     cu            cac    --    c   ag 

Deep sequencing

555189 reads, 9.5e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr2: 32178254-32178321 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:
• RNAcentral:URS000075ECEF_9031
• miRBase Tracker:MI0001189

Mature sequence gga-miR-148a-5p

• Accession: MIMAT0026503
• Sequence: 6 - aaaguucugugacacucagacu - 27
• Deep sequencing: 1828 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-148a-5p
  • miRDB:gga-miR-148a-5p

Mature sequence gga-miR-148a-3p

• Accession: MIMAT0001120
• Sequence: 44 - ucagugcacuacagaacuuugu - 65
• Deep sequencing: 553360 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00003BBF48_9031
• Predicted targets:
  • TargetScanVert:gga-miR-148a-3p
  • miRDB:gga-miR-148a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).