miRBase entry: gga-mir-148a

Stem-loop gga-mir-148a


Accession
MI0001189
Description
Gallus gallus gga-mir-148a precursor miRNA
Gene family
MIPF0000056; mir-148

Literature search
19 open access papers mention gga-mir-148a
(39 sentences)

Sequence

474633 reads, 8720 reads per million, 5 experiments
gaagcAAAGUUCUGUGACACUCAGACUcugguuacgauagcagUCAGUGCACUACAGAACUUUGUcuc
((.(((((((((((((.((((..(((((((.......))).))))))))...))))))))))))).))

Structure
  a             --A    CA    -   gu 
ga gcAAAGUUCUGUG   CACU  GACU cug  u
|| |||||||||||||   ||||  |||| |||  a
cu UGUUUCAAGACAU   GUGA  CUga gau  c
  c             CAC    --    c   ag 


Annotation confidence High
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Comments
This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context
chr2: 32178254-32178321 [-]

Database links

Mature gga-miR-148a-3p

Accession MIMAT0001120
Description Gallus gallus gga-miR-148a-3p mature miRNA
Sequence 44 - UCAGUGCACUACAGAACUUUGU - 65
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-148a-5p

Accession MIMAT0026503
Description Gallus gallus gga-miR-148a-5p mature miRNA
Sequence 6 - AAAGUUCUGUGACACUCAGACU - 27
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45