Stem-loop gga-mir-153

Accession

MI0001188

Description

Gallus gallus gga-mir-153 precursor miRNA

Gene family

MIPF0000050; mir-153

Literature search

2 open access papers mention gga-mir-153
(5 sentences)

Sequence

30546 reads, 338 reads per million, 5 experiments

agcgguugccagugUCAUUUUUGUGAUGUUGCAGCUaguaauaugagcccagUUGCAUAGUCACAAAAGUGAucauuggaaacugug
.((((((.(((((((((((((((((((..(((((((.((.......))..)))))))..))))))))))))).)))))).)))))).

Structure

a      g      -             GU       -a  aa 
 gcgguu ccagug UCAUUUUUGUGAU  UGCAGCU  gu  u
 |||||| |||||| |||||||||||||  |||||||  ||  a
 ugucaa gguuac AGUGAAAACACUG  ACGUUga  cg  u
g      a      u             AU       cc  ag 

Annotation confidence High

Comments

This sequence is a predicted homologue of a verified miRNA from human, mouse or rat. Its expression has not been validated in chicken.

Genome context

chr2: 8846565-8846651 [-]

Mature gga-miR-153-3p

• Accession: MIMAT0001119
• Description: Gallus gallus gga-miR-153-3p mature miRNA
• Sequence: 53 - UUGCAUAGUCACAAAAGUGA - 72
• Evidence: experimental ; Illumina [2]

Mature gga-miR-153-5p

• Accession: MIMAT0026502
• Description: Gallus gallus gga-miR-153-5p mature miRNA
• Sequence: 15 - UCAUUUUUGUGAUGUUGCAGCU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45