miRBase entry: gga-mir-19b

Stem-loop gga-mir-19b


Accession
MI0001180
Description
Gallus gallus gga-mir-19b precursor miRNA
Gene family
MIPF0000011; mir-19

Literature search
9 open access papers mention gga-mir-19b
(53 sentences)

Sequence

4645 reads, 125 reads per million, 5 experiments
cacuguucucugguuAGUUUUGCAGGUUUGCAUCCAGCuguaugauacucugcUGUGCAAAUCCAUGCAAAACUGAcuguggcagug
(((((((...((((((((((((((((((((((..((((.............)))))))))).)).)))))))))))))).)))))))

Structure
       cuc              -  -      UC    uguau 
cacuguu   ugguuAGUUUUGCA GG UUUGCA  CAGC     g
|||||||   |||||||||||||| || ||||||  ||||     a
gugacgg   gucAGUCAAAACGU CC AAACGU  GUcg     u
       --u              A  U      --    ucuca 


Annotation confidence High
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Genome context
chr1: 148023376-148023462 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from gga-mir-19b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-19b-3p

Accession MIMAT0001110
Description Gallus gallus gga-miR-19b-3p mature miRNA
Sequence 54 - UGUGCAAAUCCAUGCAAAACUGA - 76
Evidence experimental
cloned [2], Illumina [3]

Mature gga-miR-19b-5p

Accession MIMAT0026496
Description Gallus gallus gga-miR-19b-5p mature miRNA
Sequence 16 - AGUUUUGCAGGUUUGCAUCCAGC - 38
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45