miRBase entry: gga-mir-221

Stem-loop gga-mir-221


Accession
MI0001178
Description
Gallus gallus gga-mir-221 precursor miRNA
Gene family
MIPF0000051; mir-221

Literature search
23 open access papers mention gga-mir-221
(141 sentences)

Sequence

84383 reads, 930 reads per million, 5 experiments
gacuguccagguuuggggcaugAACCUGGCAUACAAUGUAGAUUUCUGUguuuguuaagcaacAGCUACAUUGUCUGCUGGGUUUCcagcugccuggaa
.....(((((((....((...((((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))))))....))))))).

Structure
gacug       uugg  cau          U         AUUU    -    g 
     uccaggu    gg   gAACCUGGCA ACAAUGUAG    CUGU guuu  
     |||||||    ||   |||||||||| |||||||||    |||| |||| u
     agguccg    cC   UUUGGGUCGU UGUUACAUC    GAca cgaa  
----a       ucga  ---          C         ----    a    u 


Annotation confidence High
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Genome context
chr1: 110650534-110650632 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-221-3p

Accession MIMAT0001108
Description Gallus gallus gga-miR-221-3p mature miRNA
Sequence 64 - AGCUACAUUGUCUGCUGGGUUUC - 86
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-221-5p

Accession MIMAT0026494
Description Gallus gallus gga-miR-221-5p mature miRNA
Sequence 23 - AACCUGGCAUACAAUGUAGAUUUCUGU - 49
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45