Stem-loop sequence gga-let-7b

Accession

MI0001172 (change log)

Description

Gallus gallus let-7b stem-loop

Gene family

MIPF0000002; let-7

Literature search

51 open access papers mention gga-let-7b
(401 sentences)

Stem-loop

       au                     ucaggguagugauuu 
5' cagg  gagguaguagguugugugguu               u
   ||||  |||||||||||||||||||||                
3' gucc  uuccgucauccaacauaucaa               g
       -c                     uagaggacuaacccc 

Deep sequencing

8829252 reads, 1.02e+05 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr1: 71292310-71292394 [+]	sense ENSGALT00000028948 ; gga-let-7b-201; exon 1
AADN04003343.1: 13389-13473 [-]	sense ENSGALT00000028948 ; gga-let-7b-201; exon 1

Clustered miRNAs

< 10kb from gga-let-7b

• gga-let-7a-3: chr1: 71291481-71291556 [+]
• gga-let-7b: chr1: 71292310-71292394 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075D515_9031
• miRBase Tracker:MI0001172

Mature sequence gga-let-7b

• Accession: MIMAT0001102
• Sequence: 6 - ugagguaguagguugugugguu - 27
• Deep sequencing: 8829103 reads, 5 experiments
• Evidence: experimental; cloned [2]
• Database links:
  • RNAcentral:URS0000324096_9031
• Predicted targets:
  • TargetScanVert:gga-let-7b
  • miRDB:gga-let-7b

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.