Stem-loop gga-mir-135a-2

Accession

MI0001169

Description

Gallus gallus gga-mir-135a-2 precursor miRNA

Gene family

MIPF0000028; mir-135

Literature search

8 open access papers mention gga-mir-135a-2
(10 sentences)

Sequence

23732 reads, 262 reads per million, 5 experiments

agauaaauucacucuaguguuuUAUGGCUUUUUAUUCCUAUGUGAuaguaauaaagucucAUGUAGGGAUGGAAGCCAUGAAauacauugugaaaaauca
.(((...(((((....((((((((((((((((.((((((((((((.(.(.....).).))))))))))))))))))))))))))))...)))))..))).

Structure

a   aaa     ucua                U            u g a 
 gau   uucac    guguuuUAUGGCUUUU AUUCCUAUGUGA a u a
 |||   |||||    |||||||||||||||| |||||||||||| | | u
 cua   aagug    cauaAAGUACCGAAGG UAGGGAUGUAcu u a a
a   -aa     -uua                -            c g a 

Annotation confidence High

Genome context

chr1: 46334585-46334684 [+]

Mature gga-miR-135a-5p

• Accession: MIMAT0001099
• Description: Gallus gallus gga-miR-135a-5p mature miRNA
• Sequence: 23 - UAUGGCUUUUUAUUCCUAUGUGA - 45
• Evidence: experimental ; Illumina [2]

Mature gga-miR-135a-2-3p

• Accession: MIMAT0026489
• Description: Gallus gallus gga-miR-135a-2-3p mature miRNA
• Sequence: 61 - AUGUAGGGAUGGAAGCCAUGAA - 82
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45