Stem-loop sequence gga-mir-135a-2

Accession

MI0001169 (change log)

Description

Gallus gallus miR-135a-2 stem-loop

Gene family

MIPF0000028; mir-135

Literature search

8 open access papers mention gga-mir-135a-2
(10 sentences)

Stem-loop

   a   aaa     ucua                u            u g a 
5'  gau   uucac    guguuuuauggcuuuu auuccuauguga a u a
    |||   |||||    |||||||||||||||| |||||||||||| | | u
3'  cua   aagug    cauaaaguaccgaagg uagggauguacu u a a
   a   -aa     -uua                -            c g a 

Deep sequencing

27674 reads, 200 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 46334585-46334684 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000028945 ; gga-mir-135a-2-201; exon 1

Database links

• EntrezGene:
• RNAcentral:URS000075A0B0_9031
• miRBase Tracker:MI0001169

Mature sequence gga-miR-135a-5p

• Accession: MIMAT0001099
• Sequence: 23 - uauggcuuuuuauuccuauguga - 45
• Deep sequencing: 75830 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00000DF6D0_9031
• Predicted targets:
  • TargetScanVert:gga-miR-135a-5p
  • miRDB:gga-miR-135a-5p

Mature sequence gga-miR-135a-2-3p

• Accession: MIMAT0026489
• Sequence: 61 - auguagggauggaagccaugaa - 82
• Deep sequencing: 2393 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000075AB6F_9031
• Predicted targets:
  • TargetScanVert:gga-miR-135a-2-3p
  • miRDB:gga-miR-135a-2-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).