Stem-loop sequence gga-mir-29b-1

Accession

MI0001167 (change log)

Description

Gallus gallus miR-29b-1 stem-loop

Gene family

MIPF0000009; mir-29

Literature search

14 open access papers mention gga-mir-29b-1
(55 sentences)

Stem-loop

       -     -          u      gu      uuaac 
5' ccuc aggaa gcugguuuca auggug  uuagau     u
   |||| ||||| |||||||||| ||||||  ||||||     a
3' ggag uucuu ugacuaaagu uaccac  gaucug     u
       g     g          u      --      uuacu 

Deep sequencing

71573 reads, 660 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr1: 3433759-3433839 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-29b-1

• gga-mir-29b-1: chr1: 3433759-3433839 [+]
• gga-mir-29a: chr1: 3434776-3434864 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075AD70_9031
• miRBase Tracker:MI0001167

Mature sequence gga-miR-29b-1-5p

• Accession: MIMAT0026488
• Sequence: 9 - agcugguuucauauggugguuuaga - 33
• Deep sequencing: 2090 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000075C24A_9031
• Predicted targets:
  • TargetScanVert:gga-miR-29b-1-5p
  • miRDB:gga-miR-29b-1-5p

Mature sequence gga-miR-29b-3p

• Accession: MIMAT0001097
• Sequence: 51 - uagcaccauuugaaaucaguguu - 73
• Deep sequencing: 139071 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS000024463E_9031
• Predicted targets:
  • TargetScanVert:gga-miR-29b-3p
  • miRDB:gga-miR-29b-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).