miRBase entry: gga-mir-29b-1

Stem-loop gga-mir-29b-1


Accession
MI0001167
Description
Gallus gallus gga-mir-29b-1 precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
14 open access papers mention gga-mir-29b-1
(55 sentences)

Sequence

20021 reads, 238 reads per million, 5 experiments
ccucaggaAGCUGGUUUCAUAUGGUGGUUUAGAuuuaacuauucauugucUAGCACCAUUUGAAAUCAGUGUUcuuggagg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))).))))

Structure
    -     -          U      GU      uuaac 
ccuc aggaA GCUGGUUUCA AUGGUG  UUAGAu     u
|||| ||||| |||||||||| ||||||  ||||||     a
ggag uucUU UGACUAAAGU UACCAC  GAUcug     u
    g     G          U      --      uuacu 


Annotation confidence High
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Genome context
chr1: 3433759-3433839 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-29b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-29b-3p

Accession MIMAT0001097
Description Gallus gallus gga-miR-29b-3p mature miRNA
Sequence 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-29b-1-5p

Accession MIMAT0026488
Description Gallus gallus gga-miR-29b-1-5p mature miRNA
Sequence 9 - AGCUGGUUUCAUAUGGUGGUUUAGA - 33
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45