Stem-loop sequence mmu-mir-410

AccessionMI0001161 (change log)
Symbol MGI:Mir410
DescriptionMus musculus miR-410 stem-loop
Gene family MIPF0000018; mir-154
Literature search

21 open access papers mention mmu-mir-410
(254 sentences)

   g    c       g    ug      a  a     - uuu 
5'  ggua uugagga aggu  ucugug ug guucg c   a
    |||| ||||||| ||||  |||||| || ||||| |   u
3'  ccau aacuuuu uccg  agacac au uaagc g   u
   a    -       g    gu      a  a     a uaa 
Get sequence
Deep sequencing
201700 reads, 673 reads per million, 84 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

Seitz et al. predicted a cluster of 40 miRNAs in the imprinted human 14q32 domain, and confirmed the expression of a subset by Northern blot or primer extension in mouse [1]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [4].

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr12: 109743715-109743795 [+]
OTTMUST00000113366 ; Mirg-004; exon 5
OTTMUST00000113367 ; Mirg-001; exon 6
OTTMUST00000113368 ; Mirg-005; exon 6
OTTMUST00000114051 ; Mirg-010; exon 10
OTTMUST00000114052 ; Mirg-009; exon 13
OTTMUST00000114049 ; Mirg-011; exon 15
ENSMUST00000182268 ; Mirg-004; exon 5
ENSMUST00000181543 ; Mirg-001; exon 6
ENSMUST00000183116 ; Mirg-005; exon 6
ENSMUST00000182185 ; Mirg-010; exon 10
ENSMUST00000182499 ; Mirg-009; exon 13
ENSMUST00000183144 ; Mirg-011; exon 15
Clustered miRNAs
< 10kb from mmu-mir-410
mmu-mir-382chr12: 109733771-109733846 [+]
mmu-mir-134chr12: 109734139-109734209 [+]
mmu-mir-668chr12: 109734732-109734797 [+]
mmu-mir-485chr12: 109734902-109734974 [+]
mmu-mir-453chr12: 109735619-109735700 [+]
mmu-mir-154chr12: 109738433-109738498 [+]
mmu-mir-496achr12: 109739119-109739197 [+]
mmu-mir-377chr12: 109740510-109740577 [+]
mmu-mir-541chr12: 109742409-109742498 [+]
mmu-mir-409chr12: 109743158-109743236 [+]
mmu-mir-412chr12: 109743289-109743368 [+]
mmu-mir-369chr12: 109743418-109743496 [+]
mmu-mir-410chr12: 109743715-109743795 [+]
mmu-mir-3072chr12: 109747878-109747960 [+]
Database links

Mature sequence mmu-miR-410-5p

Accession MIMAT0017172
Previous IDsmmu-miR-410*

15 - 


 - 35

Get sequence
Deep sequencing1000 reads, 48 experiments
Evidence experimental; 454 [6], Illumina [7]
Database links
Predicted targets

Mature sequence mmu-miR-410-3p

Accession MIMAT0001091
Previous IDsmmu-miR-410

50 - 


 - 70

Get sequence
Deep sequencing200699 reads, 83 experiments
Evidence experimental; Northern [1,3], PCR [1], cloned [2-4], insitu [3], Illumina [5,7]
Database links
Predicted targets


PMID:15310658 "A large imprinted microRNA gene cluster at the mouse Dlk1-Gtl2 domain" Seitz H, Royo H, Bortolin ML, Lin SP, Ferguson-Smith AC, Cavaille J Genome Res. 14:1741-1748(2004).
PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
PMID:16566924 "Identification of new central nervous system specific mouse microRNAs" Wheeler G, Ntounia-Fousara S, Granda B, Rathjen T, Dalmay T FEBS Lett. 580:2195-2200(2006).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).