Stem-loop sequence osa-MIR169n

AccessionMI0001129 (change log)
DescriptionOryza sativa miR169n stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

61 open access papers mention osa-MIR169n
(344 sentences)

   cu  -       -         u    u        guuuu   u   guug  u        caucuaucagccguugcagauuugcagugg 
5'   cc cuuuggu agccaagaa gacu gccuaugu     gcc ugu    gc cauccauc                              c
     || ||||||| ||||||||| |||| ||||||||     ||| |||    || ||||||||                               
3'   gg gagaccg ucgguucuu cugg cggguacg     cgg gua    cg guagguag                              a
   -c  u       a         -    c        ----u   u   ---a  u        uguucuuaaagaaagacuuugggaaauuag 
Get sequence
Deep sequencing
1351 reads, 800 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr11: 6085252-6085428 [-]
Clustered miRNAs
< 10kb from osa-MIR169n
osa-MIR169nChr11: 6085252-6085428 [-]
osa-MIR169oChr11: 6081528-6081700 [-]
Database links

Mature sequence osa-miR169n

Accession MIMAT0001059

11 - 


 - 31

Get sequence
Deep sequencing1345 reads, 2 experiments
Evidence by similarity; MI0000212
Database links