Stem-loop sequence osa-MIR169k

AccessionMI0001126 (change log)
DescriptionOryza sativa miR169k stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

61 open access papers mention osa-MIR169k
(304 sentences)

   u          -         u    u      -- gc   u  g    ag     u   uuaauuag    a   u ug     
5'  cugucuagau agccaagga gacu gccugu  g  cuc ug agag  aggug agc        cagc ugg u  agca 
    |||||||||| ||||||||| |||| ||||||  |  ||| || ||||  ||||| |||        |||| ||| |  ||| u
3'  ggcgggucug ucgguuccu cuga cggaca  c  gag ac ucuc  uucgc ucg        guug gcu a  ucgu 
   c          a         -    -      uu ua   u  g    -g     u   -----cua    -   - gu     
Get sequence
Deep sequencing
5947 reads, 3.85e+03 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?

This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr9: 19792133-19792288 [+]
Clustered miRNAs
< 10kb from osa-MIR169k
osa-MIR169jChr9: 19788861-19788985 [+]
osa-MIR169kChr9: 19792133-19792288 [+]
Database links

Mature sequence osa-miR169k

Accession MIMAT0001056

11 - 


 - 31

Get sequence
Deep sequencing5619 reads, 2 experiments
Evidence by similarity; MI0000212
Database links