Stem-loop sequence osa-MIR169i

Accession

MI0001124 (change log)

Description

Oryza sativa miR169i stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

61 open access papers mention osa-MIR169i
(321 sentences)

Stem-loop

   -ggaa    -     g  u     -            ua    u  -          u    u       uc  u  gua    a     c 
5'      gaga gcaag cu gcaug gugauaagggug  gcuc gg uagccaagga gacu gccugug  cu gu   gagg ucauu a
        |||| ||||| || ||||| ||||||||||||  |||| || |||||||||| |||| |||||||  || ||   |||| ||||| g
3'      cucu cguuc ga uguac cacuauucucgc  ugag cu aucgguuccu cuga cggauac  gg ca   uucc aguaa a
   aguug    a     g  u     u            --    u  g          -    -       uu  u  -ag    g     a 

Deep sequencing

6030 reads, 3.85e+03 reads per million, 2 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr8: 26803116-26803291 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR169i

• osa-MIR169i: Chr8: 26803116-26803291 [+]
• osa-MIR169h: Chr8: 26807349-26807470 [+]

Database links

• miRBase Tracker:MI0001124

Mature sequence osa-miR169i-5p.2

• Accession: MIMAT0020917
• Previous IDs: osa-miR169i.2
• Sequence: 21 - uggugauaaggguguagcucug - 42
• Deep sequencing: 11 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000018983F_39947

Mature sequence osa-miR169i-5p.1

• Accession: MIMAT0001054
• Previous IDs: osa-miR169i;osa-miR169i.1
• Sequence: 44 - uagccaaggaugacuugccug - 64
• Deep sequencing: 5637 reads, 2 experiments
• Evidence: by similarity; MI0000212

Mature sequence osa-miR169i-3p

• Accession: MIMAT0022876
• Sequence: 135 - ugagucgcucuuaucacucaug - 156
• Deep sequencing: 51 reads, 2 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00003C0627_39947

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).
3. PMID:22585409 "Novel miRNAs in the control of arsenite levels in rice" Liu Q Funct Integr Genomics. 12:649-658(2012).