Stem-loop sequence osa-MIR169f

Accession

MI0001121 (change log)

Description

Oryza sativa miR169f stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

63 open access papers mention osa-MIR169f
(316 sentences)

Stem-loop

   g             -           a     -          u   u    uaaugccuaugugcauguguuuauacgcugcucaucugcauuuugauuauccccu 
5'  ggccuuccaugag gacaagagcug uucgg uagccaagga gac ugcc                                                       g
    ||||||||||||| ||||||||||| ||||| |||||||||| ||| ||||                                                        
3'  ucggaaggugcuc cuguucucggc aggcu aucgguuccu cug acgg                                                       a
   g             u           g     u          u   u    auauauacauacucaugucucaugauguguguguauauuaacugcuguccugacu 

Deep sequencing

5670 reads, 3.65e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (MSU7): Chr2: 18558299-18558512 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001121

Mature sequence osa-miR169f.2

• Accession: MIMAT0020916
• Sequence: 11 - ugaggacaagagcugauucgg - 31
• Deep sequencing: 64 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00002B4115_39947

Mature sequence osa-miR169f.1

• Accession: MIMAT0001051
• Previous IDs: osa-miR169f
• Sequence: 32 - uagccaaggaugacuugccua - 52
• Deep sequencing: 5606 reads, 2 experiments
• Evidence: by similarity; MI0000212

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2. PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).