Stem-loop sequence osa-MIR319a

AccessionMI0001098 (change log)
DescriptionOryza sativa miR319a stem-loop
Gene family MIPF0000010; MIR159
Literature search

55 open access papers mention osa-MIR319a
(247 sentences)

Stem-loop 
   ---  u     aa a    u            cu u        u        --uua      g   aa       u  ac         aagu    g 
5'    ug guaag  g gagc cucuucagucca  c cagauggc guaggguu     uuagcu ccg  ucaucca uc  cuaccaaga    ugca g
      || |||||  | |||| ||||||||||||  | |||||||| ||||||||     |||||| |||  ||||||| ||  |||||||||    ||||  
3'    ac cguuc  c cucg gggaagucaggu  g guuugccg cgucucga     aaucga ggc  aguaggu ag  gaugguucu    augu a
   cga  u     -- -    u            ug u        -        uuuaa      g   gc       c  gc         --cu    g
Get sequence
Deep sequencing
852 reads, 500 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MSU7) Overlapping transcripts
Chr1: 26823282-26823472 [-]
intergenic
Database links

Mature sequence osa-miR319a-5p

Accession MIMAT0020914
Sequence

56 -  

agcugccgaaucauccauuca

 - 76

Get sequence
Evidence experimental; Illumina [2]

Mature sequence osa-miR319a-3p

Accession MIMAT0020915
Sequence

117 -  

acuggaugacgcgggagcuaa

 - 137

Get sequence
Deep sequencing733 reads, 2 experiments
Evidence experimental; Illumina [2]
Database links

Mature sequence osa-miR319a-3p.2-3p

Accession MIMAT0001028
Previous IDsosa-miR319a;osa-miR319a-3p.2
Sequence

162 -  

uuggacugaagggugcuccc

 - 181

Get sequence
Deep sequencing111 reads, 2 experiments
Evidence by similarity; MI0000545
Database links

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus" Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D RNA Biol. 8:538-547(2011).