miRBase entry: ath-MIR167c

Stem-loop ath-MIR167c


Accession
MI0001088
Description
Arabidopsis thaliana ath-MIR167c precursor miRNA
Gene family
MIPF0000125; MIR167_2

Literature search
45 open access papers mention ath-MIR167c
(236 sentences)

Sequence

ccaguagcaguUAAGCUGCCAGCAUGAUCUUGucuuccucucuuagguuucauauauaguuaauaaauauuuuauauauuucuuguucuuacaagauuauaugaucauagcuuagagagagagagagacUAGGUCAUGCUGGUAGUUUCACCugcuaaug
.((.((((((..((((((((((((((((((.(((((((((((((((((((((((((.........(((((.....)))))((((((....)))))).)))))))....))))).))))))).)).)))).))))))))))))))))))...)))))).))

Structure
c  g      -uU                  U    -  -       -     ----       uaguuaauaaauauuuuauauauu      u 
 ca uagcag   AAGCUGCCAGCAUGAUCU Gucu uc cucucuu agguu    ucauaua                        ucuugu c
 || ||||||   |||||||||||||||||| |||| || ||||||| |||||    |||||||                        ||||||  
 gu aucguC   UUUGAUGGUCGUACUGGA caga ag gagagag uucga    aguauau                        agaaca u
-  a      CAC                  U    g  a       a     uacu       -----------------------u      u 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR167 family [1], subsequently verified in [2]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context
chr3: 1306622-1306781 [-]

Database links

Mature ath-miR167c-5p

Accession MIMAT0001018
Description Arabidopsis thaliana ath-miR167c-5p mature miRNA
Sequence 12 - UAAGCUGCCAGCAUGAUCUUG - 32
Evidence experimental
454 [2], Illumina [3]

Mature ath-miR167c-3p

Accession MIMAT0031917
Description Arabidopsis thaliana ath-miR167c-3p mature miRNA
Sequence 130 - UAGGUCAUGCUGGUAGUUUCACC - 152
Evidence not_experimental

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799