miRBase entry: ath-MIR164c

Stem-loop ath-MIR164c


Accession
MI0001087
Description
Arabidopsis thaliana ath-MIR164c precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
43 open access papers mention ath-MIR164c
(259 sentences)

Sequence

uaacacuugaUGGAGAAGCAGGGCACGUGCGaacacaaaugaaaucgaucgguacuuguugaucauauuuucgCACGUGUUCUACUACUCCAACacgugucu
..((((.((.(((((.((.((((((((((((((.....((((..(((((........)))))))))...)))))))))))))).)).))))).)).))))..

Structure
ua    u  a     A  C              cacaa    aa     cgg 
  acac ug UGGAG AG AGGGCACGUGCGaa     auga  ucgau   u
  |||| || ||||| || ||||||||||||||     ||||  |||||    
  ugug aC ACCUC UC UCUUGUGCACgcuu     uacu  aguug   a
uc    c  A     A  A              --uua    --     uuc 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR164 family [1]. It is predicted to target mRNAs coding for NAC domain transcription factors.

Genome context
chr5: 9852674-9852775 [+]

Database links

Mature ath-miR164c-5p

Accession MIMAT0001017
Description Arabidopsis thaliana ath-miR164c-5p mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCG - 31
Evidence experimental
454 [2], Illumina [3]

Mature ath-miR164c-3p

Accession MIMAT0031916
Description Arabidopsis thaliana ath-miR164c-3p mature miRNA
Sequence 74 - CACGUGUUCUACUACUCCAAC - 94
Evidence not_experimental

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799