miRBase entry: ath-MIR319c

Stem-loop ath-MIR319c


Accession
MI0001086
Description
Arabidopsis thaliana ath-MIR319c precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
34 open access papers mention ath-MIR319c
(263 sentences)

Sequence

uagauauagaaggagauucuuucaguccagucauggauagaaaaagaagaggguagaaauaucugccgacucauccauccaaacacucgugguagagaaacgauaaauuuaaaccgcagugacugugugaaugaugcgggagauauuuuugauccuucuuuaucuguguUUGGACUGAAGGGAGCUCCUUcuuuuucua
((((...((((((((.((((((((((((((.((((((((....((((((.((.(((((((((((.(((..((((.(((.((..((((.(((((..(((.........)))..)))))))))..)).))).))))..))).))))))))))).)))))))))))))))).)))))))))))))).))))))))...))))

Structure
    uau        a              u        gaaa      a  g           g   ac    c   c  aa    c     ag   aac 
uaga   agaaggag uucuuucaguccag cauggaua    aagaag gg uagaaauaucu ccg  ucau cau ca  cacu guggu  aga   g
||||   |||||||| |||||||||||||| ||||||||    |||||| || ||||||||||| |||  |||| ||| ||  |||| |||||  |||   a
aucu   ucUUCCUC AGGGAAGUCAGGUU gugucuau    uucuuc cu guuuuuauaga ggc  agua gug gu  guga cgcca  uuu   u
    uuu        G              u        ----      -  a           g   gu    a   u  ca    -     aa   aaa 


Annotation confidence Not enough data
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Comments
This sequence is a predicted paralogue of the previously identified miR159/JAW family [1], subsequently verified in [2,3]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context
chr2: 17029701-17029899 [+]

Database links

Mature ath-miR319c

Accession MIMAT0001016
Description Arabidopsis thaliana ath-miR319c mature miRNA
Sequence 170 - UUGGACUGAAGGGAGCUCCUU - 190
Evidence experimental
cloned [2], Northern [2], 454 [3]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799

  3. PubMed ID: 15258262
    Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    "Sunkar R, Zhu JK"
    "Plant Cell (2004) 16:2001-2019