Stem-loop ath-MIR156g

Accession

MI0001082

Description

Arabidopsis thaliana ath-MIR156g precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

79 open access papers mention ath-MIR156g
(772 sentences)

Sequence

auaacgaaggCGACAGAAGAGAGUGAGCACacauggcucuuuuucuagcaugcucaugcucgaaagcucugcgugcuuacucucuucuugucuccugcucucu
.......(((.(((((((((((((((((((.((.((((....(((.(((((....))))).))))))).)).))))))))))))))).)))).))).......

Structure

auaacga   C    -               a  u    cuuu   u     g 
       agg GACA GAAGAGAGUGAGCAC ca ggcu    uuc agcau c
       ||| |||| ||||||||||||||| || ||||    ||| |||||  
       ucc cugu cuucucucauucgug gu ucga    aag ucgua u
ucucucg   u    u               c  c    ----   c     c 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR156 family [1], subsequently verified in [2]. It is predicted to target mRNAs coding for Squamosa-promoter Binding Protein (SBP)-like transcription factors.

Genome context

chr2: 8412516-8412618 [-]

Mature ath-miR156g

• Accession: MIMAT0001012
• Description: Arabidopsis thaliana ath-miR156g mature miRNA
• Sequence: 11 - CGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; 454 [2], Illumina [3]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799