miRBase entry: ath-MIR407

Stem-loop ath-MIR407


Accession
MI0001079
Description
Arabidopsis thaliana ath-MIR407 precursor miRNA


Sequence

ugggaaaaauguuaaaaaaaucgccaacuuuuaaaaaugggacaaaaaaaucgccaacuccugaaaugucaUUUAAAUCAUAUACUUUUGGUugacuuuuccagaaagauaauaaagcaaagauucguaaucaacaaaacuuugcucuguuaucuuucuaaagaacucaaucaaaaguaugugauuaaaacgacauuucaggaguuggugauuuuucaucccauuuuucaaaguuggcaauuuuuuugacauuuuuuccaaug
(((((((((((((((((((((.(((((((((.((((((((((...(((((((((((((((((((((((((.(((.((((((((((((((((((((.((((..((((((((((((.(((((((.((.((.....)).)).))))))).))))))))))))..)))).)))))))))))))))))))).))).)))))))))))))))))))))))))..)))))))))).))))))))).)))))))))))))))))))))...

Structure
---                     c         u          caa                         a   A                    c    cc            a       a  c  a 
   ugggaaaaauguuaaaaaaau gccaacuuu aaaaauggga   aaaaaucgccaacuccugaaauguc UUU AAUCAUAUACUUUUGGUuga uuuu  agaaagauaaua agcaaag uu gu a
   ||||||||||||||||||||| ||||||||| ||||||||||   ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||  |||||||||||| ||||||| || || u
   accuuuuuuacaguuuuuuua cgguugaaa uuuuuacccu   uuuuuagugguugaggacuuuacag aaa uuaguguaugaaaacuaacu aaga  ucuuucuauugu ucguuuc aa ca c
gua                     a         c          -ac                         c   a                    c    aa            c       a  a  a 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
MIR407a and MIR407b published by Sunkar and Zhu [1] map to the same locus on NC_003071.3.

Genome context
chr2: 13866205-13866467 [+]

Database links

Mature ath-miR407

Accession MIMAT0001010
Description Arabidopsis thaliana ath-miR407 mature miRNA
Sequence 72 - UUUAAAUCAUAUACUUUUGGU - 92
Evidence experimental
cloned [1], Northern [1]

References

  1. PubMed ID: 15258262
    Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
    "Sunkar R, Zhu JK"
    "Plant Cell (2004) 16:2001-2019