Stem-loop sequence ath-MIR401

Accession

MI0001070 (change log)

Description

Arabidopsis thaliana miR401 stem-loop

Literature search

3 open access papers mention ath-MIR401
(3 sentences)

Stem-loop

   uauauagacccuaaaaacgucca     u       caa   u   a  c  c         -c     cuucu a     u  a    uuuag     -uugc g   c  aacu        c      - a 
5'                        gggac aauaaug   aua gga au uu uggggcaaa  uugag     g aaacu ga agcg     gguuu     u ggc ga    ggugucga cgacac c a
                          ||||| |||||||   ||| ||| || || |||||||||  |||||     | ||||| || ||||     |||||     | ||| ||    |||||||| |||||| |  
3'                        cccug uuguuac   uau ccu ug aa accucguuu  gauuc     c uuuga uu uugc     ccaag     a ucg cu    ucacagcu gcugug g g
   ------------aagauacguua     -       cuc   u   c  u  a         uu     cuuuu c     -  c    uaaaa     uccuu g   -  --ac        c      u a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr4: 5020237-5020486 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001070

Mature sequence ath-miR401

• Accession: MIMAT0001002
• Sequence: 108 - cgaaacuggugucgaccgaca - 128
• Evidence: experimental; cloned [1]

References

1. PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" Sunkar R, Zhu JK Plant Cell. 16:2001-2019(2004).