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miRBase |
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Stem-loop sequence osa-MIR395u |
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Accession | MI0001044 (change log) | |||||||||
Previous IDs | osa-MIR395f | |||||||||
Description | Oryza sativa miR395u stem-loop | |||||||||
Gene family | MIPF0000016; MIR395 | |||||||||
Literature search |
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39 open access papers mention osa-MIR395u | |||||||||
Stem-loop |
--- cca a u aa ga auu 5' acacug gga uucccu caagc uucau aacaau u |||||| ||| |||||| ||||| ||||| |||||| u 3' ugugac ucu aagggg guuug aagug uuguug g cgc --- a - cg -- aga |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2]. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence osa-miR395u |
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Accession | MIMAT0000975 |
Previous IDs | osa-miR395f |
Sequence |
56 - gugaagcguuugggggaaauc - 76 |
Deep sequencing | 33 reads, 2 experiments |
Evidence | by similarity; MI0001007 |
References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:16117853
"Molecular evolution of the rice miR395 gene family"
Cell Res. 15:631-638(2005).
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