Stem-loop sequence osa-MIR395j

AccessionMI0001034 (change log)
DescriptionOryza sativa miR395j stem-loop
Gene family MIPF0000016; MIR395
Literature search

39 open access papers mention osa-MIR395j
(167 sentences)

       uc  a          g             -   aa     guuac     ugu 
5' gugu  cc agaguuccuu caagcacuucaca uag  cuucu     ucuca   a
   ||||  || |||||||||| ||||||||||||| |||  |||||     |||||    
3' cacg  gg ucucaagggg guuugugaagugu auc  gaaga     agggu   a
       gu  a          -             c   --     guuca     uac 
Get sequence
Deep sequencing
40 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1]. Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the genes have been renamed to reflect this arrangement [2].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr8: 3299479-3299590 [+]
Clustered miRNAs
< 10kb from osa-MIR395j
osa-MIR395hChr8: 3299144-3299255 [+]
osa-MIR395iChr8: 3299319-3299417 [+]
osa-MIR395jChr8: 3299479-3299590 [+]
osa-MIR395kChr8: 3299652-3299750 [+]
osa-MIR395yChr8: 3299815-3299924 [+]
osa-MIR395lChr8: 3299997-3300090 [+]
Database links

Mature sequence osa-miR395j

Accession MIMAT0000965

82 - 


 - 102

Get sequence
Deep sequencing39 reads, 2 experiments
Evidence by similarity; MI0001007
Database links


PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).