miRBase entry: ath-MIR399e

Stem-loop ath-MIR399e


Accession
MI0001024
Description
Arabidopsis thaliana ath-MIR399e precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
35 open access papers mention ath-MIR399e
(174 sentences)

Sequence

gaaagcauuacagggcgaauccucuauuggcaguggaaguugaugacccuuauauguuauuuucucaucauuuuccucUGCCAAAGGAGAUUUGCCUCGcaaugcuuca
(((.(((((.(.(((((((((.(((.(((((((.(((((.((((((..................)))))).))))).))))))).)))))))))))).).)))))))).

Structure
-   a     a a         c   a       u     u      cccuuaua 
 gaa gcauu c gggcgaauc ucu uuggcag ggaag ugauga        u
 ||| ||||| | ||||||||| ||| ||||||| ||||| ||||||         
 cuu cguaa G UCCGUUUAG AGG AACCGUc ccuuu acuacu        g
a   -     c C         -   A       u     u      cuuuuauu 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].

Genome context
chr2: 14443504-14443612 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR399e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR399e

Accession MIMAT0000955
Description Arabidopsis thaliana ath-miR399e mature miRNA
Sequence 79 - UGCCAAAGGAGAUUUGCCUCG - 99
Evidence experimental
PCR [1], MPSS [2], Illumina [3]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799