Accession
MI0001009
Description
Arabidopsis thaliana
ath-MIR395c precursor miRNA
Gene family
MIPF0000016;
MIR395
Literature search
25 open access papers mention ath-MIR395c
(107 sentences)
(107 sentences)
Sequence
auguccacaugaguucccuuuaacgcuucauuguugaauacucaaagccacauugguuuguauauaacaCUGAAGUGUUUGGGGGGACUCuuggugucau
(((.(..((.((((((((((.(((((((((.(((((.((((...((((((...)))))))))).))))).))))))))).)))))))))).))..).)))
(((.(..((.((((((((((.(((((((((.(((((.((((...((((((...)))))))))).))))).))))))))).)))))))))).))..).)))
Structure
u ca u u u a uca c aug c ca gaguucccuu aacgcuuca uguug auac aagcca ||| | || |||||||||| ||||||||| ||||| |||| |||||| a uac g gu CUCAGGGGGG UUGUGAAGU acaau uaug uuuggu u ug u U C a --- u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].
Genome context
chr1: 9367080-9367179 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR395c
| Accession | MIMAT0000940 |
| Description | Arabidopsis thaliana ath-miR395c mature miRNA |
| Sequence | 70 - CUGAAGUGUUUGGGGGGACUC - 90 |
| Evidence |
experimental
5'RACE [1-2], Northern [1], PCR [1], MPSS [3], 454 [4], Illumina [5] |
References
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