miRBase entry: ath-MIR395a

Stem-loop ath-MIR395a


Accession
MI0001007
Description
Arabidopsis thaliana ath-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
26 open access papers mention ath-MIR395a
(157 sentences)

Sequence

augucuccuagaguuccucugagcacuucauuggggauacaauuuuucuaaaugauuauccaCUGAAGUGUUUGGGGGAACUCccggacccau
(((..(((..((((((((((((((((((((.((((......((((....)))).....)))).))))))))))))))))))))..)))..)))

Structure
   uc   ua                    u    gauaca    u 
aug  ucc  gaguuccucugagcacuuca uggg      auuu u
|||  |||  |||||||||||||||||||| ||||      ||||  
uac  agg  CUCAAGGGGGUUUGUGAAGU accu      uaaa c
   cc   cc                    C    -auuag    u 


Annotation confidence Not enough data
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Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].

Genome context
chr1: 9363196-9363288 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR395a

Accession MIMAT0000938
Description Arabidopsis thaliana ath-miR395a mature miRNA
Sequence 63 - CUGAAGUGUUUGGGGGAACUC - 83
Evidence experimental
5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  3. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  4. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799