Stem-loop sequence ath-MIR394b

AccessionMI0001006 (change log)
DescriptionArabidopsis thaliana miR394b stem-loop
Gene family MIPF0000100; MIR394
Literature search

12 open access papers mention ath-MIR394b
(24 sentences)

Stem-loop 
     u     ga   -      u c             ucucuauauuuauguguaauaagu 
5' cu acaga  ucu uuggca u uguccaccuccuc                        g
   || |||||  ||| |||||| | |||||||||||||                         
3' ga ugucu  aga aaccgu a acggguggaggag                        u
     u     ag   u      c u             aaugcuuuguguggcaucuaugca
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Confidence Annotation confidence: not enough data
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Comments

This sequence belongs to the miR394 family of miRNAs, which are predicted to target mRNAs coding for F-box proteins [1].

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr1: 28568808-28568928 [+]
intergenic
Database links

Mature sequence ath-miR394b-5p

Accession MIMAT0000937
Previous IDsath-miR394b
Sequence

14 -  

uuggcauucuguccaccucc

 - 33

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Evidence experimental; 5'RACE [1], Northern [1], PCR [1], 454 [2-3], MPSS [2]

Mature sequence ath-miR394b-3p

Accession MIMAT0031907
Sequence

90 -  

aggugggcauacugccaauag

 - 110

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Evidence not experimental

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
3
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).