Stem-loop sequence rno-mir-320

Accession

MI0000972 (change log)

Description

Rattus norvegicus miR-320 stem-loop

Gene family

MIPF0000163; mir-320

Literature search

37 open access papers mention rno-mir-320
(266 sentences)

Stem-loop

   gc    c      ---c         uu       c      g 
5'   cucg uguccu    cgccuucuc  cccgguu uucccg a
     |||| ||||||    |||||||||  ||||||| ||||||  
3'   gggu auagga    gcgggagag  gggucga aagggc g
   --    -      aaaa         uu       a      u 

Deep sequencing

241785 reads, 513 reads per million, 510 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr15: 52134276-52134357 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir320
• miRBase Tracker:MI0000972

Mature sequence rno-miR-320-5p

• Accession: MIMAT0017168
• Previous IDs: rno-miR-320*
• Sequence: 16 - gccuucucuucccgguucuucc - 37
• Deep sequencing: 739 reads, 187 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-320-5p
  • miRDB:rno-miR-320-5p

Mature sequence rno-miR-320-3p

• Accession: MIMAT0000903
• Previous IDs: rno-miR-320
• Sequence: 48 - aaaagcuggguugagagggcga - 69
• Deep sequencing: 238265 reads, 506 experiments
• Evidence: experimental; cloned [1], SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-320-3p
  • miRDB:rno-miR-320-3p
  • microrna.org:rno-miR-320-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).