miRBase entry: rno-mir-320

Stem-loop rno-mir-320


Accession
MI0000972
Description
Rattus norvegicus rno-mir-320 precursor miRNA
Gene family
MIPF0000163; mir-320

Literature search
37 open access papers mention rno-mir-320
(272 sentences)

Sequence

135730 reads, 2356 reads per million, 506 experiments
gccucgcuguccuccGCCUUCUCUUCCCGGUUCUUCCcggagucgggAAAAGCUGGGUUGAGAGGGCGAaaaaggauauggg
..((((.((((((.(((((((((..(((((((.((((((....)))))).)))))))..)))))))))....))))))))))

Structure
gc    c      ---c         UU       C      g 
  cucg uguccu    cGCCUUCUC  CCCGGUU UUCCcg a
  |||| ||||||    |||||||||  ||||||| ||||||  
  gggu auagga    GCGGGAGAG  GGGUCGA AAgggc g
--    -      aaaA         UU       A      u 


Annotation confidence Not enough data
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Genome context
chr15: 52134276-52134357 [+]

Database links

Mature rno-miR-320-5p

Accession MIMAT0017168
Description Rattus norvegicus rno-miR-320-5p mature miRNA
Sequence 16 - GCCUUCUCUUCCCGGUUCUUCC - 37
Evidence experimental
SOLiD [2]

Mature rno-miR-320-3p

Accession MIMAT0000903
Description Rattus norvegicus rno-miR-320-3p mature miRNA
Sequence 48 - AAAAGCUGGGUUGAGAGGGCGA - 69
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249