Stem-loop rno-mir-300

Accession

MI0000971

Description

Rattus norvegicus rno-mir-300 precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

7 open access papers mention rno-mir-300
(36 sentences)

Sequence

212303 reads, 3785 reads per million, 454 experiments

gcuacUUGAAGAGAGGUUAUCCUUUGUguguuugcuuuacgcgaaaugaaUAUGCAAGGGCAAGCUCUCUUCgaggagc
(((.(((((((((((.((..((((((((((((((.(((....))).)))))))))))))).)).))))))))))).)))

Structure

   a           G  AU              c   a 
gcu cUUGAAGAGAG UU  CCUUUGUguguuug uuu c
||| ||||||||||| ||  |||||||||||||| |||  
cga gagCUUCUCUC AA  GGGAACGUAUaagu aag g
   g           G  -C              a   c 

Annotation confidence Not enough data

Genome context

chr6: 133874152-133874230 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-300

Mature rno-miR-300-5p

• Accession: MIMAT0004743
• Description: Rattus norvegicus rno-miR-300-5p mature miRNA
• Sequence: 6 - UUGAAGAGAGGUUAUCCUUUGU - 27
• Evidence: experimental ; cloned [2-3], SOLiD [4]

Mature rno-miR-300-3p

• Accession: MIMAT0000902
• Description: Rattus norvegicus rno-miR-300-3p mature miRNA
• Sequence: 51 - UAUGCAAGGGCAAGCUCUCUUC - 72
• Evidence: experimental ; cloned [1-3], SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68


4. PubMed ID: 17805466
   Cloning and identification of novel microRNAs from rat hippocampus
   "He X, Zhang Q, Liu Y, Pan X"
   "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714