miRBase entry: rno-mir-298

Stem-loop rno-mir-298


Accession
MI0000969
Description
Rattus norvegicus rno-mir-298 precursor miRNA
Gene family
MIPF0000206; mir-298

Literature search
13 open access papers mention rno-mir-298
(34 sentences)

Sequence

44391 reads, 1754 reads per million, 406 experiments
ccaggccuucGGCAGAGGAGGGCUGUUCUUCCCuuggguuuuaugacugggAGGAACUAGCCUUCUCUCUGCUuaggagugg
(((..(((..(((((((((((((((((((((((...((((....))))))))))))).))))))).))))))).)))..)))

Structure
   gg   uc       -       -         uug    u 
cca  ccu  GGCAGAG GAGGGCU GUUCUUCCC   gguu u
|||  |||  ||||||| ||||||| |||||||||   ||||  
ggu  gga  UCGUCUC CUUCCGA CAAGGAggg   ucag a
   ga   -u       U       U         ---    u 


Annotation confidence High
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Genome context
chr3: 172357943-172358024 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-298
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-298-5p

Accession MIMAT0000900
Description Rattus norvegicus rno-miR-298-5p mature miRNA
Sequence 11 - GGCAGAGGAGGGCUGUUCUUCCC - 33
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-298-3p

Accession MIMAT0017166
Description Rattus norvegicus rno-miR-298-3p mature miRNA
Sequence 52 - AGGAACUAGCCUUCUCUCUGCU - 73
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249