Stem-loop rno-mir-223

Accession

MI0000963

Description

Rattus norvegicus rno-mir-223 precursor miRNA

Gene family

MIPF0000067; mir-223

Literature search

49 open access papers mention rno-mir-223
(372 sentences)

Sequence

60933 reads, 231 reads per million, 488 experiments

ucuggccuucugcaguguuacgcucCGUGUAUUUGACAAGCUGAGUUGgacacucugugugguagagUGUCAGUUUGUCAAAUACCCCaaguguggcucaugcuuaucag
.((((......((((.((((((((..(.((((((((((((((......(((((((((.....))))))))))))))))))))))).)..)))))))).).)))...))))

Structure

u    ccuucu   - u        cC U              GAGUUG         u 
 cugg      gca g guuacgcu  G GUAUUUGACAAGCU      gacacucug g
 ||||      ||| | ||||||||  | ||||||||||||||      ||||||||| u
 gacu      cgu c cgguguga  C CAUAAACUGUUUGA      CUGUgagau g
-    ---auu   a u        aC C              ------         g 

Annotation confidence High

Genome context

chrX: 65367812-65367921 [+]

Mature rno-miR-223-5p

• Accession: MIMAT0017165
• Description: Rattus norvegicus rno-miR-223-5p mature miRNA
• Sequence: 26 - CGUGUAUUUGACAAGCUGAGUUG - 48
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-223-3p

• Accession: MIMAT0000892
• Description: Rattus norvegicus rno-miR-223-3p mature miRNA
• Sequence: 68 - UGUCAGUUUGUCAAAUACCCC - 88
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249