Stem-loop sequence rno-mir-218a-2

Accession

MI0000957 (change log)

Previous IDs

rno-mir-218-2

Description

Rattus norvegicus miR-218a-2 stem-loop

Gene family

MIPF0000026; mir-218

Literature search

14 open access papers mention rno-mir-218a-2
(43 sentences)

Stem-loop

   gac   uu -cc   gg       uuu         cu        gguggaacga  g 
5'    cag  g   gcg  gcuuucc   gugcuugau  aaccaugu          ug a
      |||  |   |||  |||||||   |||||||||  ||||||||          ||  
3'    guc  c   cgc  cgaaagg   cacgaacug  uugguaca          gc a
   -ac   cu ucu   ua       cgc         uc        --------ag  a 

Deep sequencing

364589 reads, 218 reads per million, 482 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr10: 20428661-20428770 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000009714 ; Slit3-201; intron 10

Database links

• EntrezGene:Mir218-2
• miRBase Tracker:MI0000957

Mature sequence rno-miR-218a-5p

• Accession: MIMAT0000888
• Previous IDs: rno-miR-218;rno-miR-218a
• Sequence: 25 - uugugcuugaucuaaccaugu - 45
• Deep sequencing: 722210 reads, 480 experiments
• Evidence: experimental; cloned [1-3], Northern [1-2], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-218a-5p
  • miRDB:rno-miR-218a-5p
  • microrna.org:rno-miR-218a-5p

Mature sequence rno-miR-218a-2-3p

• Accession: MIMAT0004740
• Previous IDs: rno-miR-218*;rno-miR-218-2*;rno-miR-218a-2*
• Sequence: 67 - caugguucugucaagcaccgcg - 88
• Deep sequencing: 3255 reads, 212 experiments
• Evidence: experimental; cloned [3], SOLiD [4]
• Predicted targets:
  • TargetScanVert:rno-miR-218a-2-3p
  • miRDB:rno-miR-218a-2-3p
  • microrna.org:rno-miR-218a-2-3p

References

1. PMID:14691248 "Identification of many microRNAs that copurify with polyribosomes in mammalian neurons" Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G Proc Natl Acad Sci U S A. 101:360-365(2004).
2. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).