Stem-loop sequence rno-mir-217

Accession

MI0000956 (change log)

Description

Rattus norvegicus miR-217 stem-loop

Gene family

MIPF0000077; mir-217

Literature search

18 open access papers mention rno-mir-217
(57 sentences)

Stem-loop

   accacagucauugua    u     c c  a  c     c         c   auaa     
5'                guuu gaugu g ag ua ugcau aggaacuga ugg    gacu 
                  |||| ||||| | || || ||||| ||||||||| |||    ||| c
3'                caaa cuacg c uc gu acgua uccuugacu acc    cuga 
   --------------a    u     a u  c  u     a         -   ---a     

Deep sequencing

274172 reads, 550 reads per million, 303 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr14: 113119529-113119633 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-217

• rno-mir-216a: chr14: 113112129-113112234 [+]
• rno-mir-217: chr14: 113119529-113119633 [+]

Database links

• EntrezGene:Mir217
• miRBase Tracker:MI0000956

Mature sequence rno-miR-217-5p

• Accession: MIMAT0000887
• Previous IDs: rno-miR-217
• Sequence: 32 - uacugcaucaggaacugacugg - 53
• Deep sequencing: 268028 reads, 302 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-217-5p
  • miRDB:rno-miR-217-5p
  • microrna.org:rno-miR-217-5p

Mature sequence rno-miR-217-3p

• Accession: MIMAT0017161
• Previous IDs: rno-miR-217*
• Sequence: 70 - aucaguuccuaaugcauugccu - 91
• Deep sequencing: 6055 reads, 101 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-217-3p
  • miRDB:rno-miR-217-3p

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).