miRBase entry: rno-mir-214

Stem-loop rno-mir-214


Accession
MI0000954
Description
Rattus norvegicus rno-mir-214 precursor miRNA
Gene family
MIPF0000062; mir-214

Literature search
59 open access papers mention rno-mir-214
(523 sentences)

Sequence

52850 reads, 84 reads per million, 469 experiments
guccuggauggacAGAGUUGUCAUGUGUCUgccugucuacacuugcugugcagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
((((.....)))).(.(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))).).....

Structure
guccuggauggacA A           U          aca            aacau 
              G GUUGUCAUGUG CUgccugucu   cuugcugugcag     c
              | ||||||||||| ||||||||||   ||||||||||||     c
              c caacaguacac GACGGACAGA   GGACGACAuguc     g
---------uccga c           u          CAC            cacuc 


Annotation confidence High
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Genome context
chr13: 80130905-80131014 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-214
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-214-5p

Accession MIMAT0017159
Description Rattus norvegicus rno-miR-214-5p mature miRNA
Sequence 14 - AGAGUUGUCAUGUGUCU - 30
Evidence experimental
SOLiD [2]

Mature rno-miR-214-3p

Accession MIMAT0000885
Description Rattus norvegicus rno-miR-214-3p mature miRNA
Sequence 71 - ACAGCAGGCACAGACAGGCAG - 91
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249