Stem-loop sequence rno-mir-211

Accession

MI0000951 (change log)

Description

Rattus norvegicus miR-211 stem-loop

Gene family

MIPF0000042; mir-204

Literature search

4 open access papers mention rno-mir-211
(8 sentences)

Stem-loop

   -ca  -u    ccu      u                ca     u    ag  cu 
5'    gc  ugga   gugacc cugggcuucccuuugu  uccuu gccu  gc  c
      ||  ||||   |||||| ||||||||||||||||  ||||| ||||  ||   
3'    cg  aucu   cacugg gacucggggggaaacg  aggaa cggg  ug  u
   aga  uc    --c      u                ac     -    -g  ag 

Deep sequencing

1479395 reads, 1.24e+03 reads per million, 492 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 125042119-125042224 [+]
• Overlapping transcripts:

  sense

  ENSRNOT00000065343 ; Trpm1-201; intron 6

  ENSRNOT00000021262 ; Trpm1-202; intron 6

Database links

• EntrezGene:Mir211
• miRBase Tracker:MI0000951

Mature sequence rno-miR-211-5p

• Accession: MIMAT0000882
• Previous IDs: rno-miR-211
• Sequence: 26 - uucccuuugucauccuuugccu - 47
• Deep sequencing: 1479388 reads, 492 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-211-5p
  • miRDB:rno-miR-211-5p
  • microrna.org:rno-miR-211-5p

Mature sequence rno-miR-211-3p

• Accession: MIMAT0017157
• Previous IDs: rno-miR-211*
• Sequence: 62 - ggcaaggacagcaaaggggg - 81
• Deep sequencing: 5 reads, 5 experiments
• Evidence: experimental; SOLiD [2]
• Predicted targets:
  • TargetScanVert:rno-miR-211-3p
  • miRDB:rno-miR-211-3p

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).