Stem-loop sequence rno-mir-210

Accession

MI0000950 (change log)

Description

Rattus norvegicus miR-210 stem-loop

Gene family

MIPF0000086; mir-210

Literature search

53 open access papers mention rno-mir-210
(550 sentences)

Stem-loop

   cc  gg -a  cc u     cu    a     a   cc    -     c  c   gc 
5'   gg  c  gu  c ccagg  cagg cagcc cug  caca gcaca ug guu  u
     ||  |  ||  | |||||  |||| ||||| |||  |||| ||||| || |||   
3'   cc  g  cg  g ggucc  gucu gucgg gac  gugu cgugu ac cag  c
   --  aa cg  ac -     cu    a     c   -a    g     c  c   gc 

Deep sequencing

88282 reads, 27.3 reads per million, 495 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 214208355-214208464 [-]
• Overlapping transcripts:

  antisense

  ENSRNOT00000053739 ; Mir3574-201; exon 1

Clustered miRNAs

< 10kb from rno-mir-210

• rno-mir-210: chr1: 214208355-214208464 [-]
• rno-mir-3574: chr1: 214208349-214208466 [+]

Database links

• EntrezGene:Mir210
• miRBase Tracker:MI0000950

Mature sequence rno-miR-210-5p

• Accession: MIMAT0017156
• Previous IDs: rno-miR-210*
• Sequence: 28 - agccacugcccacagcacacug - 49
• Deep sequencing: 3988 reads, 414 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-210-5p
  • miRDB:rno-miR-210-5p

Mature sequence rno-miR-210-3p

• Accession: MIMAT0000881
• Previous IDs: rno-miR-210
• Sequence: 66 - cugugcgugugacagcggcuga - 87
• Deep sequencing: 84249 reads, 495 experiments
• Evidence: experimental; cloned [1-2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-210-3p
  • miRDB:rno-miR-210-3p
  • microrna.org:rno-miR-210-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).