Stem-loop rno-mir-208a

Accession

MI0000949

Description

Rattus norvegicus rno-mir-208a precursor miRNA

Gene family

MIPF0000178; mir-208

Literature search

48 open access papers mention rno-mir-208a
(194 sentences)

Sequence

24228 reads, 193 reads per million, 192 experiments

uuccuuugacggguGAGCUUUUGGCCCGGGUUAUACcugacucucacguAUAAGACGAGCAAAAAGCuuguuggucagaggag
.(((((((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).))))))))).

Structure

u         g           G  C  GG      c   c 
 uccuuugac gguGAGCUUUU GC CG  UUAUAC uga  
 ||||||||| ||||||||||| || ||  |||||| ||| u
 aggagacug uuguuCGAAAA CG GC  AAUAug acu  
g         g           A  A  AG      c   c 

Annotation confidence High

Genome context

chr15: 33613451-33613533 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-208a

Mature rno-miR-208a-5p

• Accession: MIMAT0017155
• Description: Rattus norvegicus rno-miR-208a-5p mature miRNA
• Sequence: 15 - GAGCUUUUGGCCCGGGUUAUAC - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-208a-3p

• Accession: MIMAT0000880
• Description: Rattus norvegicus rno-miR-208a-3p mature miRNA
• Sequence: 50 - AUAAGACGAGCAAAAAGC - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 12554859
   New microRNAs from mouse and human
   "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
   "RNA (2003) 9:175-179


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249