Stem-loop sequence rno-mir-206

Accession

MI0000948 (change log)

Description

Rattus norvegicus miR-206 stem-loop

Gene family

MIPF0000038; mir-1

Literature search

51 open access papers mention rno-mir-206
(241 sentences)

Stem-loop

   --   c  c                     c u     auau 
5'   cuu cc aggccacaugcuucuuuauau c cauag    c
     ||| || ||||||||||||||||||||| | |||||    a
3'   gaa gg uuuggugugugaaggaaugua g guauc    c
   gu   c  u                     a -     gcgu 

Deep sequencing

126104 reads, 109 reads per million, 266 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr9: 26791764-26791847 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-206

• rno-mir-206: chr9: 26791764-26791847 [+]
• rno-mir-133b: chr9: 26795649-26795732 [+]

Database links

• EntrezGene:Mir206
• miRBase Tracker:MI0000948

Mature sequence rno-miR-206-5p

• Accession: MIMAT0017154
• Previous IDs: rno-miR-206*
• Sequence: 13 - acaugcuucuuuauauccucau - 34
• Deep sequencing: 132 reads, 31 experiments
• Evidence: experimental; SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-206-5p
  • miRDB:rno-miR-206-5p

Mature sequence rno-miR-206-3p

• Accession: MIMAT0000879
• Previous IDs: rno-miR-206
• Sequence: 51 - uggaauguaaggaagugugugg - 72
• Deep sequencing: 125968 reads, 265 experiments
• Evidence: experimental; cloned [1-2], SOLiD [3]
• Predicted targets:
  • TargetScanVert:rno-miR-206-3p
  • miRDB:rno-miR-206-3p
  • microrna.org:rno-miR-206-3p

References

1. PMID:16766679 "Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes" Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H Genes Dev. 20:1732-1743(2006).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).