miRBase entry: rno-mir-206

Stem-loop rno-mir-206


Accession
MI0000948
Description
Rattus norvegicus rno-mir-206 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
51 open access papers mention rno-mir-206
(241 sentences)

Sequence

97909 reads, 204 reads per million, 224 experiments
cuuccccaggccACAUGCUUCUUUAUAUCCUCAUagauaucacugcgcuaUGGAAUGUAAGGAAGUGUGUGGuuuuggcaagug
(((.((.(((((((((((((((((((((.(.(((((...........)))))).))))))))))))))))))))).)).)))..

Structure
--   c  c                     C U     auau 
  cuu cc aggccACAUGCUUCUUUAUAU C CAUag    c
  ||| || ||||||||||||||||||||| | |||||    a
  gaa gg uuuGGUGUGUGAAGGAAUGUA G GUauc    c
gu   c  u                     A -     gcgu 


Annotation confidence High
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Genome context
chr9: 26791764-26791847 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-206
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-206-5p

Accession MIMAT0017154
Description Rattus norvegicus rno-miR-206-5p mature miRNA
Sequence 13 - ACAUGCUUCUUUAUAUCCUCAU - 34
Evidence experimental
SOLiD [3]

Mature rno-miR-206-3p

Accession MIMAT0000879
Description Rattus norvegicus rno-miR-206-3p mature miRNA
Sequence 51 - UGGAAUGUAAGGAAGUGUGUGG - 72
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249