miRBase entry: rno-mir-200a

Stem-loop rno-mir-200a


Accession
MI0000943
Description
Rattus norvegicus rno-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
67 open access papers mention rno-mir-200a
(518 sentences)

Sequence

396697 reads, 690 reads per million, 430 experiments
cugggccucugugggCAUCUUACCGGACAGUGCUGGauuucuuggcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugaccca
.(((((.(((.(((((((((((((((((((((.((((..((.......)).)))).))))))))))))).)))))))).))).).))))

Structure
c    - c   g        -             C    uu  uu 
 uggg c ucu ugggCAUC UUACCGGACAGUG UGGa  uc  g
 |||| | ||| |||||||| ||||||||||||| ||||  ||  g
 accc g gga acuUGUAG AAUGGUCUGUCAC AUcu  ag  c
-    a u   a        C             A    -c  uu 


Annotation confidence High
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Genome context
chr5: 173489366-173489454 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-200a-5p

Accession MIMAT0017151
Description Rattus norvegicus rno-miR-200a-5p mature miRNA
Sequence 16 - CAUCUUACCGGACAGUGCUGG - 36
Evidence experimental
SOLiD [2]

Mature rno-miR-200a-3p

Accession MIMAT0000874
Description Rattus norvegicus rno-miR-200a-3p mature miRNA
Sequence 54 - UAACACUGUCUGGUAACGAUGU - 75
Evidence experimental
cloned [1], SOLiD [2]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249