miRBase entry: rno-mir-199a

Stem-loop rno-mir-199a


Accession
MI0000941
Description
Rattus norvegicus rno-mir-199a precursor miRNA
Gene family
MIPF0000040; mir-199

Literature search
67 open access papers mention rno-mir-199a
(260 sentences)

Sequence

1145553 reads, 1079 reads per million, 488 experiments
uggaagcuucuggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacugggcaagggccagca
.........((((...((((((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)))).))))))))..

Structure
uggaagcuu    aga    -    c   gcC       U        C   U  --  ac 
         cugg   uccu gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
         ||||   |||| |||| |||   ||||||| |||||||| ||| ||  ||   
         gacc   ggga cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
-------ac    ---    a    u   AUU       C        -   u  ug  gu 


Annotation confidence High
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Genome context
chr13: 80125487-80125596 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-199a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-199a-5p

Accession MIMAT0000872
Description Rattus norvegicus rno-miR-199a-5p mature miRNA
Sequence 31 - CCCAGUGUUCAGACUACCUGUUC - 53
Evidence experimental
cloned [1], SOLiD [3]

Mature rno-miR-199a-3p

Accession MIMAT0004738
Description Rattus norvegicus rno-miR-199a-3p mature miRNA
Sequence 70 - ACAGUAGUCUGCACAUUGGUUA - 91
Evidence experimental
cloned [2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249