miRBase entry: rno-mir-194-2

Stem-loop rno-mir-194-2


Accession
MI0000938
Description
Rattus norvegicus rno-mir-194-2 precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
21 open access papers mention rno-mir-194-2
(131 sentences)

Sequence

1893432 reads, 1967 reads per million, 500 experiments
uggcucccacccccUGUAACAGCAACUCCAUGUGGAagugcccacugauuCCAGUGGGGCUGCUGUUAUCUgggguggaggcugg
.((((.(((((((..(((((((((.((((((.(((((...........))))))))))).)))))))))..))))))).))))..

Structure
-u    c       cU         A      G     gugc 
  ggcu ccacccc  GUAACAGCA CUCCAU UGGAa    c
  |||| |||||||  ||||||||| |||||| |||||    c
  ucgg ggugggg  UAUUGUCGU GGGGUG ACCuu    a
gg    a       UC         C      -     aguc 


Annotation confidence High
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Genome context
chr1: 221634786-221634870 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-194-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-194-5p

Accession MIMAT0000869
Description Rattus norvegicus rno-miR-194-5p mature miRNA
Sequence 15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-194-3p

Accession MIMAT0017148
Description Rattus norvegicus rno-miR-194-3p mature miRNA
Sequence 51 - CCAGUGGGGCUGCUGUUAUCU - 71
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249