miRBase entry: rno-mir-193a

Stem-loop rno-mir-193a


Accession
MI0000936
Description
Rattus norvegicus rno-mir-193a precursor miRNA
Gene family
MIPF0000082; mir-193

Literature search
19 open access papers mention rno-mir-193a
(121 sentences)

Sequence

47166 reads, 130 reads per million, 469 experiments
gcggacgggagcugagagcUGGGUCUUUGCGGGCAAGAUGAgggugucaguucAACUGGCCUACAAAGUCCCAGUccucggcuccc
......((((((((((.((((((.(((((.((((.((.((((........)))).)).)))).))))).)))))).))))))))))

Structure
gcggac          a      U     C    A  A    ggu 
      gggagcugag gcUGGG CUUUG GGGC AG UGAg   g
      |||||||||| |||||| ||||| |||| || ||||    
      cccucggcuc UGACCC GAAAC UCCG UC Acuu   u
------          c      U     A    G  A    gac 


Annotation confidence High
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Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
chr10: 67065896-67065981 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-193a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-193a-5p

Accession MIMAT0004736
Description Rattus norvegicus rno-miR-193a-5p mature miRNA
Sequence 20 - UGGGUCUUUGCGGGCAAGAUGA - 41
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-193a-3p

Accession MIMAT0000868
Description Rattus norvegicus rno-miR-193a-3p mature miRNA
Sequence 54 - AACUGGCCUACAAAGUCCCAGU - 75
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249