miRBase entry: rno-mir-190a-1

Stem-loop rno-mir-190a-1


Accession
MI0000933
Description
Rattus norvegicus rno-mir-190a-1 precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
7 open access papers mention rno-mir-190a-1
(7 sentences)

Sequence

21610 reads, 48 reads per million, 446 experiments
ugcaggccucugugUGAUAUGUUUGAUAUAUUAGGUuguuauuuaauccaACUAUAUAUCAAGCAUAUUCCUacagugucuugcc
.(((((.(.(((((.((((((((((((((((..(((((..........)))))))))))))))))))))..))))).).))))).

Structure
u     c u     -U                UA     uuau 
 gcagg c cugug  GAUAUGUUUGAUAUAU  GGUug    u
 ||||| | |||||  ||||||||||||||||  |||||     
 cguuc g gacaU  UUAUACGAACUAUAUA  UCAac    u
c     u u     CC                --     cuaa 


Annotation confidence High
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Genome context
chr8: 73030047-73030131 [-]

Database links

Mature rno-miR-190a-5p

Accession MIMAT0000865
Description Rattus norvegicus rno-miR-190a-5p mature miRNA
Sequence 15 - UGAUAUGUUUGAUAUAUUAGGU - 36
Evidence experimental
SOLiD [2]

Mature rno-miR-190a-3p

Accession MIMAT0017145
Description Rattus norvegicus rno-miR-190a-3p mature miRNA
Sequence 51 - ACUAUAUAUCAAGCAUAUUCCU - 72
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 12554859
    New microRNAs from mouse and human
    "Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T"
    "RNA (2003) 9:175-179

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249