Stem-loop rno-mir-187

Accession

MI0000932

Description

Rattus norvegicus rno-mir-187 precursor miRNA

Gene family

MIPF0000078; mir-187

Literature search

8 open access papers mention rno-mir-187
(73 sentences)

Sequence

28369 reads, 64 reads per million, 425 experiments

gggcucacaggacacaaugcggauccucAGGCUACAACACAGGACCcgggcgcugcucugaccccUCGUGUCUUGUGUUGCAGCCGGagggacgcaggucugca
..((.....((((.(..((((..(((((.((((.(((((((((((.((((.((......).).)).)).))))))))))).)))).))))).))))))))))).

Structure

gg  ucaca    a aa    ga     A    A           C  -  c - ug 
  gc     ggac c  ugcg  uccuc GGCU CAACACAGGAC cg gg g c  c
  ||     |||| |  ||||  ||||| |||| ||||||||||| || || | |   
  cg     ucug g  acgc  gggaG CCGA GUUGUGUUCUG GC cc c g  u
-a  -----    - --    -a     G    C           U  U  c a uc 

Annotation confidence High

Genome context

chr18: 16390507-16390610 [-]

Mature rno-miR-187-5p

• Accession: MIMAT0017144
• Description: Rattus norvegicus rno-miR-187-5p mature miRNA
• Sequence: 29 - AGGCUACAACACAGGACC - 46
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-187-3p

• Accession: MIMAT0000864
• Description: Rattus norvegicus rno-miR-187-3p mature miRNA
• Sequence: 66 - UCGUGUCUUGUGUUGCAGCCGG - 87
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249