Stem-loop rno-mir-152

Accession

MI0000921

Description

Rattus norvegicus rno-mir-152 precursor miRNA

Gene family

MIPF0000056; mir-148

Literature search

19 open access papers mention rno-mir-152
(120 sentences)

Sequence

52981 reads, 100 reads per million, 481 experiments

uguuccccgggcccAGGUUCUGUGAUACACUCCGACUcgggcucuggagcagUCAGUGCAUGACAGAACUUGGgcccgguaggac
...((((((((((((((((((((.((.((((..((((...(((....))))))))))).)).)))))))))))))))))..))).

Structure

ugu   --                 G  A    CC    cgg   c 
   ucc  ccgggcccAGGUUCUGU AU CACU  GACU   gcu u
   |||  ||||||||||||||||| || ||||  ||||   |||  
   agg  ggcccgGGUUCAAGACA UA GUGA  CUga   cga g
--c   au                 G  C    --    ---   g 

Annotation confidence High

Genome context

chr10: 84719319-84719403 [+]

Mature rno-miR-152-5p

• Accession: MIMAT0017134
• Description: Rattus norvegicus rno-miR-152-5p mature miRNA
• Sequence: 15 - AGGUUCUGUGAUACACUCCGACU - 37
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-152-3p

• Accession: MIMAT0000854
• Description: Rattus norvegicus rno-miR-152-3p mature miRNA
• Sequence: 53 - UCAGUGCAUGACAGAACUUGG - 73
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249