Stem-loop sequence rno-mir-141

AccessionMI0000914 (change log)
DescriptionRattus norvegicus miR-141 stem-loop
Gene family MIPF0000019; mir-8
Literature search

31 open access papers mention rno-mir-141
(146 sentences)

Stem-loop 
   -         u a u       --    u          au    gaa 
5'  ggcugacuc g g ccaucuu  ccag gcaguguugg  gguu   g
    ||||||||| | | |||||||  |||| ||||||||||  ||||   u
3'  uugacuggg c c gguagaa  gguc ugucacaauc  ucga   a
   c         c c c       au    -          -c    agc
Get sequence
Deep sequencing
1330813 reads, 1.52e+03 reads per million, 487 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr4: 157236346-157236439 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-141
rno-mir-200cchr4: 157236786-157236854 [-]
rno-mir-3575chr4: 157236759-157236873 [+]
rno-mir-141chr4: 157236346-157236439 [-]
Database links

Mature sequence rno-miR-141-5p

Accession MIMAT0017128
Previous IDsrno-miR-141*
Sequence

14 -  

uccaucuuccagugcaguguug

 - 35

Get sequence
Deep sequencing14117 reads, 286 experiments
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-141-3p

Accession MIMAT0000846
Previous IDsrno-miR-141
Sequence

58 -  

uaacacugucugguaaagaugg

 - 79

Get sequence
Deep sequencing1316651 reads, 485 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).